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Assemblage de sequences nucleiques
Résultats de CAP (assemblage de séquences nucléiques)
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Number of segment pairs = 992; number of pairwise comparisons = 462
'+' means given segment; '-' means reverse complement
Number of additional pairwise comparisons = 20
OVERLAPS CONTAINMENTS
******************* Contig 1 ********************
f-41_sp6+
k-09_sp6+
o-04_sp6+ is in k-09_sp6+
o-01_sp6+ is in o-04_sp6+
******************* Contig 2 ********************
k-03_sp6-
k-06_sp6- is in k-03_sp6-
k-11_sp6- is in k-03_sp6-
k-02_sp6- is in k-03_sp6-
k-01_sp6- is in k-03_sp6-
f-35_sp6- is in k-01_sp6-
f-37_sp6- is in k-01_sp6-
k-04_sp6- is in f-37_sp6-
k-08_sp6- is in f-37_sp6-
G-41_sp6- is in f-37_sp6-
f-31_sp6- is in k-01_sp6-
G-31_sp6- is in f-31_sp6-
G-32_sp6- is in k-01_sp6-
k-12_sp6+
f-38_sp6+ is in k-12_sp6+
f-33_sp6+ is in f-38_sp6+
k-10_sp6+ is in k-12_sp6+
f-34_sp6+ is in k-12_sp6+
f-39_sp6+ is in k-12_sp6+
G-42_sp6+ is in f-39_sp6+
k-05_sp6+ is in k-12_sp6+
o-03_sp6+ is in k-12_sp6+
f-40_sp6+ is in k-12_sp6+
o-02_sp6- is in k-12_sp6+
f-36_sp6- is in o-02_sp6-
G-40_sp6- is in f-36_sp6-
f-42_sp6- is in o-02_sp6-
G-39_sp6- is in o-02_sp6-
DETAILED DISPLAY OF CONTIGS
******************* Contig 1 ********************
. : . : . : . : . : . :
f-41_sp6+ TTTTACTAACCTATGCATCCAANGCGTTGGGAGCTCTCCC-TATGGTCGACCTGCAGGCG
k-09_sp6+ TT-CTCAGCTATGCATCCAACGCGTTGGGAGCTCTCCCATATGGTCGACCTGCAGGCG
o-04_sp6+ T-CTCACCTATGCATCCAACGCGTTGGGAGCTCTCCC-TATGGTCGACCTGCAGGCG
o-01_sp6+ T-CTCACCTATGCATCCAANGCGTTGGGAGCTCTCCC-TATGGTCGACCTGCAGGCG
____________________________________________________________
consensus TTTT-CTCACCTATGCATCCAACGCGTTGGGAGCTCTCCC-TATGGTCGACCTGCAGGCG
. : . : . : . : . : . :
f-41_sp6+ GCCGCGAATTCACTAGTGATTCTAGCCTTGTAGTTTCAAACGCAGTTCCCAGGTTAAGCC
k-09_sp6+ GCCGCGAATTCACTAGTGATTCTAGCTTTGTAGTTTCAAACGCAATTCCCAGGTTGAGCC
o-04_sp6+ GCCGCGAATTCACTAGTGATTCTAGCTTTGTAGTTTCAAACGCAATTCCCAGGTTGAGCC
o-01_sp6+ GCCGCGAATTCACTAGTGATTCTAGCTTTGTAGTTTCAAACGCAATTCCCAGGTTGAGCC
____________________________________________________________
consensus GCCGCGAATTCACTAGTGATTCTAGCTTTGTAGTTTCAAACGCAATTCCCAGGTTGAGCC
. : . : . : . : . : . :
f-41_sp6+ CGGGGCTTTCACATCTGACTTA-AGAAA-CCGCCTGCGCACGCTTTACGCCCAGTAATTC
k-09_sp6+ CGGGGCTTTCACATCTGACTTGCA-AAA-CCGCCTGCGCACGCTTTACGCCCAGTAATTC
o-04_sp6+ CGGGGCTTTCACATCTGACTTGCA-GAA-CCGCCTGCGCACGCTTTACGCCCAGTAATTC
o-01_sp6+ CGGGGCTTTCACATCTGACTTGC--GAAACCGCCTGCGCACGCTTTACGCCCAGTAATCC
____________________________________________________________
consensus CGGGGCTTTCACATCTGACTTGCA-AAA-CCGCCTGCGCACGCTTTACGCCCAGTAATTC
. : . : . : . : . : . :
f-41_sp6+ CGATTAACGCCTGCACCCTACGTATTACCGCGGNTGCTGGCACGTAGNTAGCCGGTGCTT
k-09_sp6+ CGATTAACGCTTGCACCCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTT
o-04_sp6+ CGATTAACGCTCGCACCCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTT
o-01_sp6+ CGATTAACGCTTGCACCCTACGTATTACCGCGGCTGNTGGCACGTGGNNGGNCGGTGCTT
____________________________________________________________
consensus CGATTAACGCTTGCACCCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTT
. : . : . : . : . : . :
f-41_sp6+ CTTCTTCAGGTACCGTCATC-AA--TCCGTG--G-TATTAGCA--CGA-A--CCATTTCG
k-09_sp6+ ATTCTCCAGGTACCGTCATCGAA-CTC--TC--G-TATTAG-A--A-A-AGTCCATTTC-
o-04_sp6+ ATTCTCCAGGTACCGTCATCCAAAC-C---C--GGTATTA--A--T-AGATTCGATTTC-
o-01_sp6+ ATTCTCCAGGTACCGANAT--ANAN-C---CAAGGTATTA--ACCT--GGC-CAATTTC-
____________________________________________________________
consensus ATTCTCCAGGTACCGTCATCCAAACTC--TC--GGTATTAG-A--T-AGACTCCATTTC-
. : . : . : . : . : . :
f-41_sp6+ TTCC-TGCCGAAAGAGCTTTACAACCCGAAGGCCTTCTTCACTCACGCGGCATGGCTGGA
k-09_sp6+ TTCCCTGACAAAAGTGGTTTACAACCCGAAGGCCTTCTTCCCACACGCGGCATGGCTGGA
o-04_sp6+ TTCCCTGACAAAAGTGGTTTACAACCCGAAGGCCTTCTTCCCACACGCGGCATGGCTGGA
o-01_sp6+ TTCCCTGACAAAAGTGGTTTACAACCCGAAGGCCTTCTTCCCACACGCGGCATGGCTGGA
____________________________________________________________
consensus TTCCCTGACAAAAGTGGTTTACAACCCGAAGGCCTTCTTCCCACACGCGGCATGGCTGGA
. : . : . : . : . : . :
f-41_sp6+ TCAGGCTTGCGCCCATTGTCCAAAATTCCCCACT-GCTGCCTCCCGTA-GGAGTCTGGAC
k-09_sp6+ TCAGGGTTGCCCCCATTGTCCAAAATTCCCCACT-GCTGCCTCCCGTA-GGAGTCTGGGC
o-04_sp6+ TCAGGGTTGCCCCCATTGTCCAAAATTCCCCACT-GCTGCCTCCCGTA-GGAGTCTGGGC
o-01_sp6+ TCAGGGTTGCCCCCATTGTCCAAAATTCCCCACTTGCTGCCTCCCGTAANGAGTTTGGCC
____________________________________________________________
consensus TCAGGGTTGCCCCCATTGTCCAAAATTCCCCACT-GCTGCCTCCCGTA-GGAGTCTGGGC
. : . : . : . : . : . :
f-41_sp6+ CGTGTCTCAGTTCCAGTGTG-GCTGATCAT-CCTCTCAGACCAGCTACGGATCGTCCGCC
k-09_sp6+ CGTGTCTCAGTCCCAGTGTG-GCTGGTCGT-C-TCTCAAACCAGCTACTGATCGAA-GC-
o-04_sp6+ CGTGTCTCAGTCCCAGTGTG-GCTGGTCGTTC-TCTCAAACCAGCTACTGATCGTC-GC-
o-01_sp6+ CGTGTCTAA-TCCCAGTGGGNGCTGGTCCTTC-TCTCAA-CCAGCTACTGATCGNC-GCN
____________________________________________________________
consensus CGTGTCTCAGTCCCAGTGTG-GCTGGTCGTTC-TCTCAAACCAGCTACTGATCGTC-GCC
. : . : . : . : . : . :
f-41_sp6+ TTGGGTGGGGCTTTTACCCCGCCAACTAAGCTAAT-CCCGATATCGGCCACTCCTATAGT
k-09_sp6+ TTGG-TGG--CCTTTACCCCGNCAACTA-GCTAAT-A--GACATCGGCCGTTCA-ATAGN
o-04_sp6+ TTGG-TGG--CTTTTACCCCG-CAACAA-GCTAATCA---AC-TCGGCCGTTCA-ATAGC
o-01_sp6+ TTGG-NGG--GGTTTACCCCN-CAACA--GNTAATNA--NAN-TNGGCCGT-CN-ATA
____________________________________________________________
consensus TTGG-TGG--CTTTTACCCCGCCAACAA-GCTAATCA--GACATCGGCCGTTCA-ATAGC
. : . : . : . : . : . :
f-41_sp6+ GCGTGGTCTTGGCGATCCCTACTTTCCTCCAATCGAATTCCCCGCGGCCGCCATGGCGGN
k-09_sp6+ GAGAGG-CTTG--GATCCCTACTTTC-TC-AATCNAATTCCC-G-GGCCGC-ATGGNGG-
o-04_sp6+ GC-AGG-CTTG--CATCCCTACTT-C-TC-AATCNA-TTCCC-GCGGCCGC-ATGG-GG-
____________________________________________________________
consensus GCGAGG-CTTG--GATCCCTACTTTC-TC-AATCGAATTCCC-GCGGCCGC-ATGGCGG-
. : . : . : . : . : . :
f-41_sp6+ CCGGGNAAG-CA-TGCNACGTCGGNCCCAATTCGNCCTAATCCCNGANGNCNNNATTAAC
k-09_sp6+ C-GG--AA--CA-T-CNANGNNGG-CCCA-TT--NCCTAAA---GGA-G-CG--AT-A-C
o-04_sp6+ CCGG--AANTCAA
____________________________________________________________
consensus CCGG--AAG-CA-TGCNACGTCGGNCCCAATTCGNCCTAAACCCGGANGNCGNNATTAAC
. : . : . : . : . : . :
f-41_sp6+ AATTNANTTGGCCCGNCNNTTTTACAACCGNC
k-09_sp6+ AAT--ACT-GGCC-G-CG-TT--ANA-C-G--NGGACNGAAACCTGGGNNCANTA
____________________________________________________________
consensus AATTNACTTGGCCCGNCGNTTTTACAACCGNCNGGACNGAAACCTGGGNNCANTA
******************* Contig 2 ********************
. : . : . : . : . : . :
k-03_sp6- CTG--GNNAAAAGG-GGNAATNTNNTTN---C-A---AAG-GNNNN-TNA-AGNTGGGNN
k-06_sp6- GNNGNNAAA-GG-GG-A-TNTNNTNN-----A---N-GNGAT---T-A-AG-TGGGTA
k-11_sp6- AAGGNGGGGCT-TTTTTC---CCACGGAAG-GNT---TNNCAGNT---T-
k-02_sp6- NNGC-A---A-G-GCGAT-TAA-ANTTGG-T-
k-01_sp6- ATTA-AG-TGGGT-
f-35_sp6- ATTA-AG-TGGGT-
____________________________________________________________
consensus CTGNNGNNAAAAGG-GGGAATNTTTTTC---C-A---AAG-GATAT-TTA-AGTTGGGT-
. : . : . : . : . : . :
k-03_sp6- ANCGN-CN-AGGGNTTTTNCC-ANNTCNNNNNNC-GT-TNTAAAA--ANGGNNGG-CCCA
k-06_sp6- A-CGN-CA-AGG--TTTTCCC-AG-TCNNN--NC-GT-TGTAAAACNA---C-GG-NCCA
k-11_sp6- ATTGNNCCCAGG--TTT--CC-A--TC--C--NCNGT-T--A-----ACN-C-GG-CC--
k-02_sp6- AACGC-CA-AGGG-TTTTNCCCAG-TCNCGA--C-GT-TGTAAAA--ACG-ACGG-CC-A
k-01_sp6- ANCN--CC-ANGGNTTTTNCC-AN-TCNNN--NC-GT-TGGAAAA---CG-C-GG-CC-A
f-35_sp6- AACN--CC-AGGG-TTTTCCC-AG-TCNNN--NC-GT--GTAAAA---CNNC-GG-CC-A
f-37_sp6- C-GTNTT-AAN----CG-C-GGNCC-A
k-04_sp6- G-G-GGNCA-A
____________________________________________________________
consensus AACGC-CC-AGGG-TTTTCCC-AG-TCNCC--NC-GT-TGTAAAA--ACG-C-GG-CC-A
. : . : . : . : . : . :
k-03_sp6- GNTN-AATTNGTAA--------T-TNG-----NC---N--TC--CA-C-TATA-GG-GC-
k-06_sp6- G-TG-AATT-GTAA--------T-ANG-----AC------TC--N--C-TATA-GG--C-
k-11_sp6- N-T--A-TT-GTA---------T--CG------C-------C--C--C-TATA-G-----
k-02_sp6- G-TG-AATT-GTAA--------T-ACG-----AC------TC---A-C-TATA-GG--C-
k-01_sp6- G-TG-AATT-GTAA--------T-NCG-----NC------TC-----C-TATA-GG-GC-
f-35_sp6- G-N--AATT-GTAA--------T-NCG-----AC------TC--A--C-TATA-GG-GC-
f-37_sp6- G-TN-AATT-GTAA--------T-ACG-----AC------TC--N--C-TATA-GG-GC-
k-04_sp6- G-TTGAATT-GTNA--------TTNNN-----AN---N--TC--N--NNTANANGG-GG-
k-12_sp6+ GNNNNNNNNNNNT-TT------T----T--TC-TCA-CCTAT--GC-TCC
f-38_sp6+ TTNNNN--TN---T--TC-TNA-GCT-T--GC-TCC
k-10_sp6+ TT------T----T--TC-TCA-GCTAT--GCATCC
f-34_sp6+ TNNNNNNTN---T--TC-TNAACCT-T--GCATCC
f-39_sp6+ TNNNNGCTNC--T--TN-TGA-CCT-T--GCATCC
k-05_sp6+ T------T----T--TC-TNA-CCT-T--GC-TCC
o-03_sp6+ T------T----T--TC-TCA-CCT-T--GC-TCC
f-40_sp6+ TNNNNTNNTC-TCA-CCT-T--GCATCC
f-33_sp6+ TN---T--TC-TCA-GCT-T--GCATCC
G-42_sp6+ TTT--T--TTCTCA-NCTAT--GCATCC
____________________________________________________________
consensus G-TG-AATT-GTAA--------T-TTG-----TC---T--TC-TCA-CCTAT--GC-TCC
. : . : . : . : . : . :
k-03_sp6- ---G-GAATTGGGN-CCGNACGT-CGGC-ATGCTTC--CNGGCCN-C--C-A-TG-GCGG
k-06_sp6- ---G--AATTGGGN-CCG-ACGT-CG-C-ATGCTCC--CCGNCCG-C--C-A-TG-GCGG
k-11_sp6- ---G-NAATTGG---CCG--CGT--G-C-ATG-TTC--C-GGCCG-C--C-A-TG--CGG
k-02_sp6- ---G--AATTGGGC-CCG-ACGT-CG-C-ATGCT-C--CCGGCCCGC--C-A-TG-GCGG
k-01_sp6- ---G--AATTGGGN-CCG-ACGT-CG-C-ATGCT-C--CCGNCCG-C--C-A-TG-GCGG
f-35_sp6- ---G--AATTGGGN-CCN-ACGT-CG-C-ATGCT-C--CCGNCCG-C--C-A-TG-NCGG
f-37_sp6- ---G--AATTGGGN-CNG-NCGTTNG-C-ATGCT-N--CCGNCCG-C--C-AATG-GCGG
k-04_sp6- ---G-NAATTGGGGNCNN-ANGTN-G-C-ATGGT-TNNCCGNCCNNC--C-AANGNG-GG
k-12_sp6+ NN-GCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----GACCT-G--C-A--G-GCGG
f-38_sp6+ AC-GCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----GACCT-G--C-A--G-GCGG
k-10_sp6+ AC-GCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----GACCT-G--C-A--G-GCGG
f-34_sp6+ AANGCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----GACCT-G--C-A--G-GCGG
f-39_sp6+ ATTGCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----GACCT-G--C-A--G-GCGG
k-05_sp6+ AC-GCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----G-CCT-G--C-A--G-GCGG
o-03_sp6+ TN-GCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----GACCT-G--C-A--G-GCGG
f-40_sp6+ TT-GCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----GACCT-G--C-A--G-GCGG
f-33_sp6+ AC-GCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----GACCT-G--C-A--G-GCGG
G-42_sp6+ AACGCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C----GACCT-G--C-A--G-GCGG
f-31_sp6- T-NG-C-ATGCT-N--NCGNCCNNC--C-A-TG--CGG
k-08_sp6- T-T--CCGGCCN-C--C-A-TG-N-G-
G-41_sp6- CGNCNNC-A-TG-N-GG
o-02_sp6- CCA-TG-G-GG
f-36_sp6- CA-TG-NCGG
G-32_sp6- CGN
____________________________________________________________
consensus AC-GCG--TTGGGA-GC-T-C-T-CC-CTATGGT-C--C-GACCT-C--C-A-TG-GCGG
. : . : . : . : . : . :
k-03_sp6- -CC-GCGGGAA-TTC----G----ATT-GGAGGAAA-GTA-GGGGATCG-C-C-------
k-06_sp6- -CC-GCGGGAA-TTC----G----ATT-GGAGGAAA-GCA-GGGGATCGGCTCTTCTTCG
k-11_sp6- -CC-GCGGGAA-TTC----G----ATT-G-AAGAAN-C-A-GGG-ATCG-C---------
k-02_sp6- -CC-GCGGGAA-TTC----G----ATT-GGAGGAAA-GTA-GGGGATCG-C---------
k-01_sp6- -CC-GCGGGAA-TTC----G----ATT-GGAGAAAA-GCA-GGGGATCG-T---------
f-35_sp6- -CC-GCGGGAA-TTC----G----ATT-GGAGGAAA-GTA-GGGGATCG-C---------
f-37_sp6- -CC-GCGGGAA-TTC----G----ATT-GGAGGAAA-GTA-GGGGATCG-C---------
k-04_sp6- -CCCGCGGGAANTTN----GG---ATT-GGAGGAAAAGTA-AGGGNNNGGC---------
k-12_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATTCGGAGGAAA-GTA-GGGGATCG-C---------
f-38_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATT-GGAGGAAA-GCA-GGGGATCG-C---------
k-10_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATT-GGAGGAAA-GCA-GGGGATCG-C---------
f-34_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATT-GGAGGAAA-GTA-GGGGATCG-C---------
f-39_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATT-GGAGGAAA-GTA-GGGGATCG-T---------
k-05_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATT-GGAGGAAA-GTA-GGGGATCG-C---------
o-03_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATT-GGAGGAAA-GTA-GGGGATCG-T---------
f-40_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATT-GGAGGAAA-GCA-GGGGATCG-C---------
f-33_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATT-GGAGGAAA-GTA-GGGGATCG-T---------
G-42_sp6+ -CC-GCG--AA-TTCACTAGT-G-ATT-GGAGGAAA-GCA-GGGGATCG-T---------
f-31_sp6- NCC-GCGGGAA-TTC----G----ATT-GGAGNAAA-GTA-GGGGATCG-C---------
k-08_sp6- -CC-G-GGGA--TT-----G----NTT-G-AG-AAA-C-A-AGGGNTN--C---------
G-41_sp6- -C--GCGG-AA-TTN----G----AT--GNAN-AAA-C-A-GGG-ATN--C---------
o-02_sp6- -CC--CG--GG----A-T--T-G-ATN-G-AG-AAA-GTA-GGG-ATNN-C---------
f-36_sp6- -CC-GCG--GG----AAT--TNG-ATT-GGAGNAAA-GTA-GGGGAT---C-GT------
G-32_sp6- -CC-NCGGGAA-TTN----N----ATT-GNAGGAAA--CAAGGGGATNG-T---------
f-42_sp6- ANT--TNGNATG-G-AGNAAA-NTANGGG-NTNN-C---------
____________________________________________________________
consensus -CC-GCGG-AA-TTCA-T-GT-G-ATT-GGAGGAAA-GTA-GGGGATCG-C---------
. : . : . : . : . : . :
k-03_sp6- -AAGA-C--CTT-GCCGCT-ATTGG-AT-GAG-CCCAAA-GTCG-G-ATTAGCT-AGTTG
k-06_sp6- GAAGAACGGCCTCGC-GCTTATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCTTAGTTG
k-11_sp6- -AAG--C--CTC-GC-G-T-ATTGG-AT-AA--CC-AAA-GTCG---ATTAGCT-AGTTG
k-02_sp6- -AAGA-C--CTC-GC-GCT-ATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
k-01_sp6- -AAGA-C--CTC-GC-GCT-ATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
f-35_sp6- -AAGA-C--CTC-CC-GCT-ACAGG-G--GCGGCC-GAT-GGCAAG-ATTAGCTTAGTTG
f-37_sp6- -AAGA-C--CTC-GC-GCTTATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCTTAGTTG
k-04_sp6- -AAG--C--CTC-GN-GCT-ATTGG-AT-GAG-CC-AAANGTCG-GGATTAGCT-AGTTG
k-12_sp6+ -AAGA-C--CTC-GC-GCT-ATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
f-38_sp6+ -AAGA-C--CTC-GC-GCT-ATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
k-10_sp6+ -AAGA-C--CTC-GC-GCT-ATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
f-34_sp6+ -AAGA-C--CTC-GC-GCT-ATTGG-ATCGAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
f-39_sp6+ -AAGA-C--CTC-GC-GCT-ATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
k-05_sp6+ -AAGA-C--CTC-GC-GCT-ATTGG-AT-GGG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
o-03_sp6+ -AAGA-C--CTT-GC-GCCGAT-GG-AT-GAG-CC-GAA-GTCG-G-ATTAGCT-AGTTG
f-40_sp6+ -AAGA-C--CTC-GC-GCT-ATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
f-33_sp6+ -AAGA-C--CTC-GC-GCT-ATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
G-42_sp6+ -AAGA-C--CTC-GC-GCT-ATTGGGAT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
f-31_sp6- -AAGA-C--CTC-GC-ACT-ATTGG-AT-GAG-CC-GAA-GTCG-G-ATTAGCT-AGTTG
k-08_sp6- -AAGC-C--CT--GC-GCTT-T-G--AT-AAN-CC-AAN--TCG-G-GT-A-CT-AGTTG
G-41_sp6- -AAG--C--CTC-GN-GCT-AT-GG-AT-GA--CC-AAA-GTCG-G-ATTAGCT-AGTTG
o-02_sp6- -A-G--C--CTC-GC-N-T-TTTGG-AT--AA-CC-AAN--TCG-G-ATTAGCT-A-TTG
f-36_sp6- -AAGA-C--CTC-GC-G-C-TATGG-AT--GAGCC-AAA-GTCG-G-ATTAGCT-AGTTG
G-32_sp6- -AAGN-C--CTC-GC-GNT-ATTGN-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
f-42_sp6- -AANN-C--CTN-GC-NNTNTTTG--AT-NAA-CCNAAA-GTCG-N-ATTANNT-ANTTG
G-31_sp6- AA-GTNG-G-ATTANCT-AGTTG
____________________________________________________________
consensus -AAGA-C--CTC-GC-GCT-ATTGG-AT-GAG-CC-AAA-GTCG-G-ATTAGCT-AGTTG
. : . : . : . : . : . :
k-03_sp6- GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
k-06_sp6- GT-G-AGG-TAATGG-CTC--A-CCAAGGCGACAATCCGTAGCTTGGTCTGAGAGGACGA
k-11_sp6- GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
k-02_sp6- GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
k-01_sp6- GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
f-35_sp6- GT-G-GGG-TAAAGG-C-CT-A-CCAAGGCGACGATCTGTAGCT-GGTCTGAGAGGACGA
f-37_sp6- GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCTTGGTCTGAGAGGACGA
k-04_sp6- GT-G-GGG-TAATGG-C-CT-A-CCAAAGCGACAATCCGTAGCT-GGTCTGAGAG-ACGA
k-12_sp6+ GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
f-38_sp6+ GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
k-10_sp6+ GTCG-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
f-34_sp6+ GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
f-39_sp6+ GT-G-AGG-TAATGG-CTC--A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
k-05_sp6+ GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
o-03_sp6+ GT-A-GGG-TAACGG-C-CT-A-CCAAGGCGACGATCCGTAGCT-GGTCTGAGAGGACGA
f-40_sp6+ GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
f-33_sp6+ GT-G-AGG-TAATGG-CTC--A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
G-42_sp6+ GTCG-AGG-TAATGG-CTC--A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
f-31_sp6- GT-G-AGG-TAACGG-C--TCA-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
k-08_sp6- GT-G-GG--TAATGG-C-CT-A-CCAAG-CGACAATCCGTAGCTNG-TCTGAGAGGACGA
G-41_sp6- GT-G-GG--TAATGG-C-CT-A-CCAAG-CGNCAATCCGTAGCT-GGTCTGAGAGGACGA
o-02_sp6- -T-G-GGC--AATG--C-CT-T-CCAAG-CG-CAATCCGTAGCT-G-TCT-AGAG-ACGA
f-36_sp6- GT-GAGGT--AATG--G-CT-CACCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
G-32_sp6- GT-G-AGG-TAATGG-CTC--A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGTGGACGA
f-42_sp6- GT-G-GGG-TAATGG-C-CT-A-C-AAGGNGNCAATCCNTANNT-GGTNTNAGAGGACGN
G-31_sp6- GT---AGGGTANCGGGC-CTTA-CCAAGGNGNCAATCCGTANCTTGGTCTGAGAGGACGN
G-40_sp6- ANC-GTANTT-GGTNTTA-AGGGNGG
____________________________________________________________
consensus GT-G-GGG-TAATGG-C-CT-A-CCAAGGCGACAATCCGTAGCT-GGTCTGAGAGGACGA
. : . : . : . : . : . :
k-03_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
k-06_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
k-11_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
k-02_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
k-01_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
f-35_sp6- CCA-GCCA-CACTGG-GACT-GAGACA-CGGCCCAGACTCCTACGGG-AGGCA-GCAGTG
f-37_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACCCCTACGGG-AGGCA-GCAGTG
k-04_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
k-12_sp6+ CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
f-38_sp6+ CCA-GCCA-CACCGG-AACT-GAGACA-CGGNCCGGACTCCTACGGG-AGGCA-ACAGTG
k-10_sp6+ CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
f-34_sp6+ CCA-GCCA-CACCGNTANCT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
f-39_sp6+ CCA-GCCA-CACCNNTNNCT-GAGACA-CGGNCCGGACTCCTACGGG-AGGCA-GCAGTG
k-05_sp6+ CCA-GCCA-CACCGN-AACT-GAGACA-CGGNCCGGACTCCTACGGG-AGGCA-GCAGTG
o-03_sp6+ CCA-GCCA-CACTGG-GACT-GCGACA-CGGCCCAGACTCCTACGGG-AGGCA-GCAGTG
f-40_sp6+ CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
f-33_sp6+ CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
G-42_sp6+ CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
f-31_sp6- CCA-GCCA-CACTGG-GACT-GAGACA-CGGCCCAGACTCCTACGGG-AGGCA-GCAGCG
k-08_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AG-CA-GCAGGG
G-41_sp6- CCA-GCCT-CACCGG-AACTTGAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
o-02_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
f-36_sp6- CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
G-32_sp6- CCA-GN-A-GANCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
f-42_sp6- CCAAGCCA-CNCCGG-AANT-NAGACA-CGGTCCGGACTCCTACGGG-AGGCAAGCAGTG
G-31_sp6- CCA-GCCA-CACTGG-GACT-GAGACA-CGGCCCAGACTCCTACGGG-AGGCA-GCAGTA
G-40_sp6- CCA-NCCNNCNCTGG-AANT-NAGACN-CGGTNCGGACTNCTACGGN-AG-CA-NCAGTG
G-39_sp6- NCGGTNCGGNCTCNT-CNGGNAGNCA-GCANNG
____________________________________________________________
consensus CCA-GCCA-CACCGG-AACT-GAGACA-CGGTCCGGACTCCTACGGG-AGGCA-GCAGTG
. : . : . : . : . : . :
k-03_sp6- GGGTATATTGGACAATGGGGG-AAACCCTGACCCAGCG-ACG-CCGCGTGTGTGAAGAAG
k-06_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
k-11_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
k-02_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
k-01_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
f-35_sp6- GGGAATTTTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
f-37_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
k-04_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACGGCCGCGTGTGTGAAGAAG
k-12_sp6+ GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
f-38_sp6+ GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
k-10_sp6+ GGGAATATTGGACAATGGGGG-AAACCCTGATCCGGCG-ACG-CCGCGTGTGTGAAGAAG
f-34_sp6+ GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
f-39_sp6+ GANAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
k-05_sp6+ GGGAATATTGGTCAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
o-03_sp6+ GGGAATAATGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
f-40_sp6+ GGGAATATTGGACAATGGGGG-NAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
f-33_sp6+ GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
G-42_sp6+ GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
f-31_sp6- GGGAATATTGGACAATGGGGG-CAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
k-08_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
G-41_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
o-02_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
f-36_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
G-32_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
f-42_sp6- GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
G-31_sp6- GGGAATATTGGACAATGGGGG-CAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
G-40_sp6- GGGAATATTGGACAATGGGGGGAAACCCTGATCCAGCGGACG-CCGCGTGTGTGAAGGAG
G-39_sp6- GGGAATATTGGACAATGGGGG-AAACCCTNATCCAGCN-ACC-CCGCNTGTGTNAAGAAG
____________________________________________________________
consensus GGGAATATTGGACAATGGGGG-AAACCCTGATCCAGCG-ACG-CCGCGTGTGTGAAGAAG
. : . : . : . : . : . :
k-03_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACT--A--A-C
k-06_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-T-C--ACGGGCT--A--A-C
k-11_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAGAAAG-C-C--ATTGATT--A--A-C
k-02_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACT--A--A-C
k-01_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-T--ACGGACT--A--A-T
f-35_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACA--A--A-T
f-37_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACG--A--A-T
k-04_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACG--A--A-T
k-12_sp6+ GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACG--A--A-T
f-38_sp6+ GCCTGCGGGTTGCAAAGCACTTTTAGTGGGGACAAAAAG-T-C--AC-G-GGTTA--A-T
k-10_sp6+ GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACT--A--A-C
f-34_sp6+ GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAGTCACGGATT-A-G-------T
f-39_sp6+ GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-T-C--ACGGATT--A--A-T
k-05_sp6+ GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACG--A--A-T
o-03_sp6+ GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-----T--ACGG-ATTAAT
f-40_sp6+ GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGANNAAAAG-NTN--ANGG-CT--A--A-N
f-33_sp6+ GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-T-C--AC-G-GATTA--A-T
G-42_sp6+ GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-T-C--ACGGATT--A--A-T
f-31_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGATGAAAAG-C-CC-AGGG-CT--A--A-T
k-08_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACG--A--A-T
G-41_sp6- GCCTGCGGGTAGTAAAGCACTTTTAGAGGGGACAAAAAG-C-C--ATTGACG--A--A-T
o-02_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACT--A--A-C
f-36_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-T-C--ACGGATT--A--A-T
G-32_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-T--ACGGATT--A--A-T
f-42_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACTT-A--A-C
G-31_sp6- GCCTGCGGGTTGTAAGGCACTTTTAGTGGGGATGAGAAG-C-TC-AGGG-CT--A--A-T
G-40_sp6- ACCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-T-C--ACGGATT--A--A-T
G-39_sp6- GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACANAAAG-C-C--ATTGATT--A--A-C
____________________________________________________________
consensus GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAG-C-C--ATTGACT--A--A-T
. : . : . : . : . : . :
k-03_sp6- A-C-T-T-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
k-06_sp6- A-C-C---GCGTGA-CCTTGATTTAACTCACAGAAAAAGCACCGGCTAACTCTGTGCCA-
k-11_sp6- A-C-T-T-GA-TGG-TCTTGATTTAACCCAAAGAATAAGCACCGGCTAACTCTGTGCCA-
k-02_sp6- A-C-T-T-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
k-01_sp6- A-C-TCT-G--TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
f-35_sp6- A-C-T-T-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
f-37_sp6- A-C-T-T-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
k-04_sp6- A-C-T-C-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
k-12_sp6+ A-C-T-C-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
f-38_sp6+ A-C-C-C-GG-TGA-TCTTGATTTAACTCACAGAAAAAGCGCCGGCTAACTCTGTGCCA-
k-10_sp6+ A-C-T-T-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
f-34_sp6+ A-C-T-CTG--TGA-TCTTGATTTAACTCACAGAAAAAGCACCGNNTAACTCTGTGCCAN
f-39_sp6+ A-C-T-CTG--TGA-TCTTGATTTAACTCACAGAAAAAGCACCGGCTAACTCTGTGCCA-
k-05_sp6+ A-C-T-C-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
o-03_sp6+ A-C-T-CTG--TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
f-40_sp6+ A-CNT-N----TGGATCTTGACNTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
f-33_sp6+ A-C-T-C-TG-TGA-TCTTGATTTAACTCACAGAAAAAGCACCGGCTAACTCTGTGCCA-
G-42_sp6+ A-C-T-CTG--TGA-TCTTGATTTAACTCACAGAAAAAGCACCGN-TAACTNTGTGCCA-
f-31_sp6- AAC--CT----TGGGTCTTGACCTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
k-08_sp6- A-C-T-T-GA-TGG-TCTTGATTTAACCCAAGGAAAAAGCACCGGCTAACTCTGTGCCA-
G-41_sp6- A-C-T-C-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
o-02_sp6- A-C-T-T-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
f-36_sp6- A-C-TCT-G--TGA-TCTTGATTTAACTCACAGAAAAAGCACCGGCTAACTCTGTGCCA-
G-32_sp6- A-C-TCT-G--CGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTANCTCTGTGCCA-
f-42_sp6- A-C-A-C-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTANCTCTGTGCCA-
G-31_sp6- AAC-TCT-----GAGTCTTGACCTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
G-40_sp6- A-C-TCT-G--TGA-TCTTGATTTAACTCACTGAAAAAGCACCGGCTAACTCTGTGCCA-
G-39_sp6- A-C-T-C-GA-TGG-TNTTGATTTAACCCAAANAAAAAGCACNGGCTAACTCTGTGCCA-
____________________________________________________________
consensus A-C-T-T-GA-TGG-TCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA-
. : . : . : . : . : . :
k-03_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
k-06_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
k-11_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGAGCGTAAAGC-G
k-02_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
k-01_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
f-35_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
f-37_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
k-04_sp6- GCAN-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
k-12_sp6+ GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
f-38_sp6+ GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGCAAAGC-G
k-10_sp6+ GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGG-CGTAAAGC-G
f-39_sp6+ GCAG-CCGCGGTAATACANAGGGTGCNN-GCGTTAATCNNAATTACTGNNCNTAAAGCCG
k-05_sp6+ GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGNAATTACTGGGCNTAAAGC-G
o-03_sp6+ GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGG-CGTAAAGC--
f-40_sp6+ GCAG-CCGCGGTAATACAGAGGGTGCGAAGCGTTAATCGGAATTACTGGGCGTAAAGC-G
f-33_sp6+ GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
G-42_sp6+ NCA
f-31_sp6- GCAN-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
k-08_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
G-41_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACGGGGCGTAAAGC-G
o-02_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
f-36_sp6- GCAA-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
G-32_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
f-42_sp6- GCAN-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
G-31_sp6- GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAGAGC-G
G-40_sp6- NCAAGCCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
G-39_sp6- ANAA-CNNCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGTCGTAAAGC-G
____________________________________________________________
consensus GCAG-CCGCGGTAATACAGAGGGTGCGA-GCGTTAATCGGAATTACTGGGCGTAAAGC-G
. : . : . : . : . : . :
k-03_sp6- CGC-GTAG-ACGGTTTTGTAAGTCGAG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
k-06_sp6- CGC-GTAG-ACGGTTTGGTAAGTC-AG-ATGAGAAATCCCC-GGGCTC-AACCT-GGGAG
k-11_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
k-02_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAGTCCCC-GGGCTC-AACCT-GGGAA
k-01_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
f-35_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
f-37_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGAGAAATCCCC-GGGCTC-AACCT-GGGAA
k-04_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
k-12_sp6+ CGC-GTAN-ACGGTTTTGTAAGTN-A--ATGTGAAATCCC--GG-CTC-AAC-T-GGGAA
f-38_sp6+ CGC-GTAG-ACGGTTTTGTAAGTC-AN-ATGTGAAATCCCC-GGNCTC-AACCT-GGGAA
k-10_sp6+ CGCCGTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GG-CTN-ANC-C-GGGA-
f-39_sp6+ CCC-CT
k-05_sp6+ CNCCGTAN-ACGGTTTTGTAAGTC-AN-ATGTGAAATCCCC-GGNCTC-AACCTTGNGAA
o-03_sp6+ CGC-GTAG-ACGGTTTTGTAAGTN-A--ATGTGAAATCCC--GG-CTC-ACC-T-GGGA-
f-40_sp6+ CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGNCTC-AACCT-GNGAA
f-33_sp6+ CGC-GTAG-ACGGTTTTGTAAGTC-AANATGTGAAATCCCC-GGNCTC-AACCT-GNGAA
f-31_sp6- TGC-GTAG-ACGGTTTTGTAAGTC-GG-ATGTGAAATCCCC-GGGCTCGAACCT-GGGAA
k-08_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
G-41_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AATCT-GGGAA
o-02_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
f-36_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
G-32_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGAGAAATCCCT-GGGCTC-AACCT-GGGAA
f-42_sp6- CGC-GTAG-ACGGTTTTGTAAGTCCAG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
G-31_sp6- TGC-GCAG-GCGGTTTTGTAAGTC-AG-ATGTGAGAGCCCC-GGGCTC-AACCT-GGGAA
G-40_sp6- CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
G-39_sp6- CGC-GTACCNCGGTTTTGTAAGTC-AG-ATGTGAAATGCCNTGGGCTC-AACCT-GGNAA
____________________________________________________________
consensus CGC-GTAG-ACGGTTTTGTAAGTC-AG-ATGTGAAATCCCC-GGGCTC-AACCT-GGGAA
. : . : . : . : . : . :
k-03_sp6- CTGCGTTTGAAACTACAA-AGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
k-06_sp6- CTGCGTTTGAAACTACAA-GGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
k-11_sp6- CTGCGTTTGAAACTACAA-AGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
k-02_sp6- CTGCGTTTGAAA-T-CA----CTA-----------GTGAATTC-GCGG--CCG-CC--T-
k-01_sp6- CTGCGTTTGAAACTACAA-GGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
f-35_sp6- CTGCGTTTGAAACTACAA-GGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
f-37_sp6- CTGCGTTTGAAACTACAA-AGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
k-04_sp6- CTGCGTTTGAAACTACAA-GGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
k-12_sp6+ CTGGGTTTGAA-CTACAA-A-CTAGAATC--N--A-T---TCC-GCGG--CCG-CA--T-
f-38_sp6+ CCGNGTTTGAAACTACAA-GGNTAGAATC--N--AAT---TCCCGCGGN-CCGNC---T
k-10_sp6+ CTGNGTTTGAA-CT-CAA-A-CTANAATC--G--AAT---TCC-GCGG--CC--CA--T-
k-05_sp6+ CTTGNNTTNAA-CTACNA-NGNTANAATC--C--AAT---TCC-CCNNNNCCC-CCCCTT
o-03_sp6+ CTGCGTT-GAA-CTACAA-G-GTANAATN-----A-T---TCC-NCGG--CCC-CA--T-
f-40_sp6+ CTGNGTTTGAAACTACAA-GGCTAGAATC--N--AAT---TCCCGCGG--NCN-CA--T-
f-33_sp6+ CTGCGTTTGAAACTACAAAGNTTANAATC--N--AAT---TCCCNCGNN-CC
f-31_sp6- TTGCGTTTGAAACTACAA-GGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
k-08_sp6- CTGCGTTTGAAACTACAA-GGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
G-41_sp6- CTGCGTTTGAAACTACAA-AGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
o-02_sp6- CTGCGTTTGAAACTACAA-AGCTAGAATC--ACTAGTGAATTC-GCGG--CCG-CC--T-
f-36_sp6- CTGCGTTTGAAACTACAA-GGCTAGAATC--ACTAGTGAATTC-GCGG--CCG-CC--T-
G-32_sp6- CTGCGTTTGAAACTACAA-GGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
f-42_sp6- CTGCGTTTGAAACTACAA-GGCTAGAATC--ACTAGTGAATTC-GCGG--CCG-CC--T-
G-31_sp6- TTGCGTTTGAAACTACAA-GGCTAGAATCACT--AGTGAATTC-GCGG--CCG-CC--T-
G-40_sp6- CTGCGTTTGAAACTACAA-GGCTAGAATC--ACTAGTGAATTC-GCGG--CCG-CC--T-
G-39_sp6- CTGCGTTTGAAACTACAA-GGCTANAATC--ACTAGTGAATTC-GCGG--CCG-CC--T-
____________________________________________________________
consensus CTGCGTTTGAAACTACAA-GGCTAGAATC--T--AGTGAATTC-GCGG--CCG-CC--T-
. : . : . : . : . : . :
k-03_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGCG-T--GGATGCATAGGT--T
k-06_sp6- GCAG-GTC-G-ACCATATGGGAGAGCTC--CCAA---CGCG-TT-GGATGCATAGGT--T
k-11_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGCG-TT-GGATGCATAGNT--G
k-02_sp6- GCAG-GTC-G-ACCATATGGGAGAGCTC--CCAA---CGCG-T--GGA-GCA-AGNT--T
k-01_sp6- GCAG-G-C-G-ACCATA-GGGAGAGCTC--CCAA---CGCG-TT-GGATGCATAGNT--T
f-35_sp6- GCAG-GTC-G-ACCATATGGGAGAGCTC--CCAA---CGCG-T--GGATGCATAGCT--G
f-37_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGCG-T--GGATGCATAGCT--C
k-04_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGCA-N--GGA-GCA-AGGT--G
k-12_sp6+ GC-G-G-C-GGANCAT--GC-A---CTCGGCCAAT--CNCTATA-GGA-GCN-A--T--T
k-10_sp6+ GC-G-G-CCGGA-CAT--CC-A---CNCGGCCCATT-CNCTTTA-GGA-GCG-A--T--T
k-05_sp6+ G
o-03_sp6+ G--GNG-CCGNA-CAT---CNA---CNNNGCCCATTNC-CT-TA-GGA-GNN-N--T--T
f-40_sp6+ G
f-31_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGCA-NT-GGATGCA-AGGT--C
k-08_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGCG-TT-GGATGCATAGNT--G
G-41_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGCG-TT-GGATGCATAGNT--G
o-02_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGC-A-A-GGATGCA-A--GG-T
f-36_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGC-A-A-GGATGCATA--GG-T
G-32_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGCG-T--GGATGCATAGNT--T
f-42_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGC-N-TTGGATGCATA--GG-T
G-31_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGC--GT-GGATGCATAGGT---
G-40_sp6- GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGC-G-TTGGATGCATA--GG-T
G-39_sp6- GCAG-GTC-G-ACCATA-GGGAGAGNNC--CCAA---CGC-N-NTGGATGCGTA--GGNT
____________________________________________________________
consensus GCAG-GTC-G-ACCATA-GGGAGAGCTC--CCAA---CGCG-TT-GGATGCATAGGT--T
. : . : . : . : . : . :
k-03_sp6- ---AG-A-------A---A-----------------------------------A----A
k-06_sp6- ---AG-A-------A---A-----------------------------------A
k-11_sp6- ---AG-A
k-02_sp6- ---AG-A-------A---A-----------------------------------A
k-01_sp6- ---AG-A-------A---A-----------------------------------A----A
f-35_sp6- ---AG-A
f-37_sp6- ---AN-A-------A---A-----------------------------------A
k-04_sp6- ---AG-A-------A---A-----------------------------------A
k-12_sp6+ ------C-------A---A-----------------------------------T----A
k-10_sp6+ ------C-------A---T-----------------------------------T----A
o-03_sp6+ ------A-------A---A-----------------------------------T----N
f-31_sp6- CCCAGNA--NCNNNA---A
k-08_sp6- ---AG-A-------A---A-----------------------------------A
G-41_sp6- ---AG-A-------A---A-----------------------------------A
o-02_sp6- ------G-------A-G-A--------A-A------A--A--AA----------NNNNNA
f-36_sp6- ---CA-G-------ANG-A--NCNNNNA
G-32_sp6- ---AG-A-------A---A
f-42_sp6- ------N-------A-GTA--------ANANNNNNNATNANC
G-31_sp6- -T-AGNAAA
G-40_sp6- ---GA-G-------AAA-AAA
G-39_sp6- ------G-------A-G-A--------A-A------A--A--AANNNAAGGNNC
____________________________________________________________
consensus ---AG-A-------A---A-----------------------------------A----A
. : . : . : . : . : . :
k-12_sp6+ ----CTGGCGGCN-TT-AACGNGGAN-GGNAACCTGNTTCCANTA-TNCTTGANAACCNT
k-10_sp6+ ----NTGGCN-CN-TT-AACGNGGACTGGAAAC-TGGGTCCAATAATNCTT
o-03_sp6+ ----CTG-C--CNNTTTAACNNNNNT-GN-AACCTGNNNCCANTA-NNNTTNNNANCCNT
o-02_sp6- NNNNC
____________________________________________________________
consensus ----CTGGCG-CN-TT-AACGNGGAC-GGAAACCTGGGTCCAATA-TNCTTGANAACCNT
. : . : . : . : . : . :
k-12_sp6+ TNCGTGGGAAANAAAGCCNC
o-03_sp6+ TNNNTGG-A
____________________________________________________________
consensus TNCGTGGGAAANAAAGCCNC
CONSENSUS SEQUENCES
>Contig 1
TTTTCTCACCTATGCATCCAACGCGTTGGGAGCTCTCCCTATGGTCGACCTGCAGGCG
GCCGCGAATTCACTAGTGATTCTAGCTTTGTAGTTTCAAACGCAATTCCCAGGTTGAGCC
CGGGGCTTTCACATCTGACTTGCAAAACCGCCTGCGCACGCTTTACGCCCAGTAATTC
CGATTAACGCTTGCACCCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTT
ATTCTCCAGGTACCGTCATCCAAACTCTCGGTATTAGATAGACTCCATTTC
TTCCCTGACAAAAGTGGTTTACAACCCGAAGGCCTTCTTCCCACACGCGGCATGGCTGGA
TCAGGGTTGCCCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGC
CGTGTCTCAGTCCCAGTGTGGCTGGTCGTTCTCTCAAACCAGCTACTGATCGTCGCC
TTGGTGGCTTTTACCCCGCCAACAAGCTAATCAGACATCGGCCGTTCAATAGC
GCGAGGCTTGGATCCCTACTTTCTCAATCGAATTCCCGCGGCCGCATGGCGG
CCGGAAGCATGCNACGTCGGNCCCAATTCGNCCTAAACCCGGANGNCGNNATTAAC
AATTNACTTGGCCCGNCGNTTTTACAACCGNCNGGACNGAAACCTGGGNNCANTA
>Contig 2
CTGNNGNNAAAAGGGGGAATNTTTTTCCAAAGGATATTTAAGTTGGGT
AACGCCCAGGGTTTTCCCAGTCNCCNCGTTGTAAAAACGCGGCCA
GTGAATTGTAATTTGTCTTCTCACCTATGCTCC
ACGCGTTGGGAGCTCTCCCTATGGTCCGACCTCCATGGCGG
CCGCGGAATTCATGTGATTGGAGGAAAGTAGGGGATCGC
AAGACCTCGCGCTATTGGATGAGCCAAAGTCGGATTAGCTAGTTG
GTGGGGTAATGGCCTACCAAGGCGACAATCCGTAGCTGGTCTGAGAGGACGA
CCAGCCACACCGGAACTGAGACACGGTCCGGACTCCTACGGGAGGCAGCAGTG
GGGAATATTGGACAATGGGGGAAACCCTGATCCAGCGACGCCGCGTGTGTGAAGAAG
GCCTGCGGGTTGTAAAGCACTTTTAGTGGGGACAAAAAGCCATTGACTAAT
ACTTGATGGTCTTGATTTAACCCAAAGAAAAAGCACCGGCTAACTCTGTGCCA
GCAGCCGCGGTAATACAGAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCG
CGCGTAGACGGTTTTGTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAA
CTGCGTTTGAAACTACAAGGCTAGAATCTAGTGAATTCGCGGCCGCCT
GCAGGTCGACCATAGGGAGAGCTCCCAACGCGTTGGATGCATAGGTT
AGAAAAA
CTGGCGCNTTAACGNGGACGGAAACCTGGGTCCAATATNCTTGANAACCNT
TNCGTGGGAAANAAAGCCNC